miR-145–5p as a predictive biomarker for breast cancer stemness by computational clinical investigation.

Dheeran, R. and Bhavjot, Kaur and Dhanamjai, Penta and Jagadish, Natesh and Meeran, Syed Musthapa (2021) miR-145–5p as a predictive biomarker for breast cancer stemness by computational clinical investigation. Computers in Biology and Medicine (2021), 135. p. 104601.

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Abstract

Background: Breast tumors enriched with breast cancer stem cells (BCSCs), play a crucial role in metastasis and tumor relapse. Hence, targeting BCSCs may lead to efficacious breast cancer therapy. BCSCs have a unique expression of stemness markers, including Nanog, POU5F1, SOX2, and CD44, which play a vital role in cancer stem cell properties. However, the regulation of microRNAs (miRNAs)-mediated cancer stem cell marker expressions is largely unclear. Methods: MIENTURNET was used to predict miRNA-target interactions. miR-TV, UALCAN and GEPIA databases were used to analyze the expression of miR-145–5p and SOX2. Survival analysis was obtained by cBioportal, KM plotter and Breast Cancer Gene-Expression Miner. RNAComposer was used to perform miRNA-mRNA duplex prediction. In vitro mRNA and miRNA analysis was performed by qRT-PCR. Results: It was observed that miR-145–5p was the common miRNA targeting stemness markers. miR-145–5p expression was found to be lower in breast cancer patients compared to healthy subjects. Based on survival analysis, low expression of miR-145–5p and high expression of SOX2 led to a poor overall survival rate in breast cancer patients. Pathway enrichment analysis indicated that SOX2 was highly enriched with transcription factors. Moreover, SOX2 expression level was also upregulated in axillary metastatic lymph nodules. Further, in vitro ectopic expression of miR-145–5p by its mimic downregulated the SOX2 expression compared to the control mimic. Overall, SOX2 was a direct target for miR-145–5p as per the binding and minimal-free energy. Conclusions: In this study, miR-145–5p targeting SOX2 was identified as a potential predictive biomarker for breast cancer stemness.

Item Type:	Article
Uncontrolled Keywords:	Breast cancer stemness miRNAs Biomarker miR-145–5p SOX2
Subjects:	500 Natural Sciences and Mathematics > 07 Life Sciences > 03 Biochemistry & Molecular Biology
Divisions:	Dept. of Biochemistry
Depositing User:	Food Sci. & Technol. Information Services
Date Deposited:	04 Dec 2020 05:43
Last Modified:	23 Nov 2021 09:12
URI:	http://ir.cftri.res.in/id/eprint/14685

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